|
|
UMLS and Its Application in Field of Intelligent Retrieval |
Bai Haiyan, Wang Li, Liang Bing |
Institute of Scientific & Technical Information of China, Beijing 100038, China |
|
|
Abstract This paper mainly investigates UMLS's composition and characteristics, emphasizes on application cases of UMLS in field of intelligent and semantic retrieval, and analyses the scene designs, technology realization and application effects of these cases, in order to provide references for design and development of intelligent retrieval system based on integrated knowledge organization systems. The application of UMLS in field of intelligence and semantic retrieval mainly includes: (Ⅰ)query expansion, such as synonym expansion, hierarchical structure expansion and phrase segmentation expansion; (Ⅱ)semantic retrieval, based on concepts and relationships between concepts;(Ⅲ)question-answering search, including question analysis, document retrieval, sentence selection and semantic clustering.
|
Received: 09 March 2012
Published: 20 May 2012
|
|
[1] UMLS Applications[EB/OL].[2012-02-20]. http://www.snu-dhpm.ac.kr/pds/files/UMLS%20Applica- tions_%ED%95%9C%EC%8A%B9%EB%B9%88.pdf.[2] U.S. National Library of Medicine.UMLS Applications[EB/OL].[2012-02-20]. http://www.nlm.nih.gov/research/umls/implementation_resources/applications.html.[3] Fung K W, Hole W T, Srinivasan S. Who is Using the UMLS and How-Insights from the UMLS User Annual Reports[C]. In:Proceedings of the 2006 AMIA Annual Symposium.American Medical Informatics Association,2006: 274-278.[4] 维基百科.一体化医学语言系统[EB/OL].[2012-02-20].http://zh.wikipedia.org/wiki/一体化医学语言系统.(Wikipedia. Unified Medical Language System[EB/OL].[2012-02-20].http://zh.wikipedia.org/wiki/一体化医学语言系统.)[5] U.S. National Library of Medicine.Fact Sheet Unified Medical Language System[EB/OL].[2012-02-20].http://www.nlm.nih.gov/pubs/factsheets/umls.html.[6] 方平.试论一体化医学语言系统(UMLS)超级叙词表的特点[J]. 图书情报工作 ,1998,42(10):26-29,41.(Fang Ping. The Characteristics of the UMLS Metathesaurus[J].Library and Information Service,1998,42(10):26-29,41.)[7] 2011AB UMLS Release Notes and Bugs[EB/OL].[2012-02-20]. http://www.nlm.nih.gov/research/umls/knowledge_sources/metathesaurus/release/notes.html.[8] Lindberg D A, Humphreys B L,McCray A T.The Unified Medical Language System[EB/OL].[2012-02-20].http://www.schattauer.de/en/magazine/subject-areas/journals-a-z/methods/contents/archive/issue/1198/manuscript/14376/download.html.[9] Tilley C,Willis J. The Unified Medical Lanuage System What is it and How to Use It? [OL].[2012-02-20].http://www.cs.rutgers.edu/~mdstone/class/336/umls.pdf.[10] Kleinsorge R,Willis J,Browne A.UMLS Overview[OL].[2012-02-20].http://www.nlm.nih.gov/research/umls/pdf/AMIA_T12_2006_UMLS.pdf.[11] Geissbuhler A, Miller R A. Clinical Application of the UMLS in a Computerized Order Entry and Decision-Support System[OL].[2012-02-20].http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2232318/pdf/procamiasymp00005-0356.pdf.[12] 方平.试论一体化医学语言系统语义网络的结构与特点[J]. 情报学报 ,1999,18(2):129-134.(Fang Ping. Study on Characteristics and Structure of Semantic Network of UMLS Knowledge Sources[J]. Journal of the China Society for Scientific and Technical Information,1999,18(2):129-134.)[13] Current Semantic Types[EB/OL].[2012-02-20].http://www.nlm.nih.gov/research/umls/META3_current_semantic_types.html.[14] 朱彦慧,腾吉斯.一体化医学语言系统及其对我国的借鉴作用[J]. 中国科技术语 ,2010,12(4): 15-18.(Zhu Yanhui,Teng Jisi. The UMLS and Its Reference to Standardize Chinese Medical Terminologies[J]. China Terminology,2010,12(4): 15-18.)[15] 维基百科.专家辞典[EB/OL].[2012-02-20].http://zh.wikipedia.org/wiki/UMLS#.E4.B8.93.E5.AE.B6.E8.BE.9E.E5.85.B8.(Wikipedia. SPECIALIST Lexicon[EB/OL].[2012-02-20]. http://zh.wikipedia.org/wiki/UMLS#.E4.B8.93.E5.AE.B6.E8.BE.9E.E5.85.B8.)[16] The SPECIALIST NLP Tools[EB/OL].[2012-02-20]. http://lexsrv3.nlm.nih.gov/Specialist/Home/index.html.[17] UMLS Reference Manual[EB/OL].[2012-02-20]. http://www.ncbi.nlm.nih.gov/books/NBK9676/.[18] Aronson A R. Effective Mapping of Biomedical Text to the UMLS Metathesaurus: The MetaMap Program[OL].[2012-02-20].http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2243666/?page=4.[19] Aronson A R, Lang F M. An Overview of MetaMap: Historical Perspective and Recent Advances[OL].[2012-02-20].http://www.lhncbc.nlm.nih.gov/lhc/docs/published/2010/pub2010033.pdf.[20] 张云秋,冷伏海.MetaMap的文本映射原理及其对检索效果影响的研究[J]. 情报学报 ,2007,26(3):345-349.(Zhang Yunqiu, Leng Fuhai. Study on the Principle of Text Mapping and Its Effect on Information Retrieval of MetaMap[J]. Journal of the China Society for Scientific and Technical Information,2007,26(3):345-349.)[21] Rindflesch T C, Aronson A R.Semantic Processing for Enhanced Access to Biomedical Knowledge[OL].[2012-02-20].http://skr.nlm.nih.gov/papers/references/semwebapp.5a.pdf.[22] Rindflesch T C,Fiszman M, Libbus B. Semantic Interpretation for the Biomedical Research Literature[EB/OL].[2012-02-20].http://ai.arizona.edu/mis596a/book_chapters/medinfo/Chapter_14.pdf.[23] DíazGaliano M C, GarcíaCumbreras M A, MartíinValdivia M T,et al. Query Expansion on Medical Image Retrieval: MeSH vs. UMLS[C]. In:Proceedings of the 9th Cross-Language Evaluation Forum Conference on Evaluating Systems for Multilingual and Multimodal Information Access. 2009.[24] 李丹亚,胡铁军,李军莲,等.中文一体化医学语言系统的构建与应用[J]. 情报杂志 ,2011,30(2):147-151.(Li Danya,Hu Tiejun,Li Junlian,et al. Construction and Application of the Chinese Unified Medical Language System[J].Journal of Intelligence,2011,30(2):147-151.)[25] Aronson A R, Rindflesch T C.Query Expansion Using the UMLS Metathesaurus[OL].[2012-02-20].http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2233565/pdf/procamiaafs00001-0521.pdf.[26] Carlin B G. PubMed Automatic Term Mapping[J].Journal of the Medical Library Association,2004,92(2): 168.[27] NLM Training:PubMed[EB/OL].[2012-02-20]. http://www.lib.hiroshima-u.ac.jp/online_tu/db/pm_workbook.pdf.[28] Hersh W,Price S,Donohoe L.Assessing Thesaurus-based Query Expansion Using the UMLS Metathesaurus[OL].[2012-02-20].http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2244120/pdf/procamiasymp00003-0379.pdf.[29] Galiano D,Cumbreras G,Valdivia M. SINAI at ImageCLEFmed 2008 [OL].[2012-02-20].http://clef.isti.cnr.it/2008/working_notes/diaz-paperCLEF2008.pdf.[30] Lu K, Mu X M.Query Expansion Using UMLS Tools for Health Information Retrieval[EB/OL].[2012-02-20].http://www.asis.org/Conferences/AM09/open-proceedings/papers/12.xml.[31] 张晓林.Semantic Web与基于语义的网络信息检索[J]. 情报学报 ,2002,21(4): 413-420.(Zhang Xiaolin. Semantic Web and Semantic-based Networked Information Retrieval[J]. Journal of the China Society for Scientific and Technical Information,2002,21(4): 413-420.)[32] Chen M. Exploring the Use of Ontological Relations in Information Retrieval[OL].[2012-02-20]. http://ischools.org/images/iConferences/iConference2009_poster_Final.pdf.[33] Chen M.Using Ontological Relations to Enrich Query Semantics[OL].[2012-02-20].http://mail.asis.org/Conferences/AM09/posters/96.pdf.[34] Semantic Medline Help[EB/OL].[2012-02-20].http://skr3.nlm.nih.gov/SemMedDemo/jsp/help.jsp.[35] Kilicoglu H,Fiszman M,Rodriguez A,et al.Semantic MEDLINE: A Web Application for Managing the Results of PubMed Searches[OL].[2012-02-20].http://pathema.jcvi.org/Pathema/presentations/kilicoglu2008.pdf.[36] 许德山,乔晓东,朱礼军. 问答系统分类研究及新进展[C].见: 第二十一届全国计算机信息管理学术研讨会论文集 ,2007.(Xu Deshan,Qiao Xiaodong,Zhu Lijun. Classification and New Progress of Question-Answering System[C].In:Proceedings of the 21st National Conference on Computer Information Management,2007.)[37] Delbecque T, Jacquemart P,Zweigenbaum P.Indexing UMLS Semantic Types for Medical Question-Answering[OL].[2012-02-20]. http://cluster.cis.drexel.edu:8080/sofia/resources/QA.Data/PDF/M_2005_ENMI_Delbecque_Indexing_UMLS_Semantic_Types_for_Medical_Question-Answering-2817493248/M_2005_ENMI_Delbecque_Indexing_UMLS_Semantic_Types_for_Medical_Question-Answering.pdf.[38] Wang W M, Hu D W,Feng M,et al.Automatic Clinical Question Answering Based on UMLS Relations[OL].[2012-02-20]. http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.126.4658&rep=rep1&type=pdf.[39] Terol R M, Martínez-Barco P,Palomar M. A Knowledge Based Method for the Medical Question Answering Problem[OL].[2012-02-20].http://rua.ua.es/dspace/bitstream/10045/4511/3/manuscriptR1.pdf.[40] 李毅,庞景安.基于多层次概念语义网络结构的中文医学信息语义标引体系和语义检索模型研究[J]. 情报学报, 2003,22(4):403-411.(Li Yi,Pang Jingan.Research on Semantic Indexing System and Semantic Retrieval Model for Chinese Medical Information Based on Multilayer Conceptual Semantic Network Structure[J]. Journal of the China Society for Scientific and Technical Information,2003,22(4):403-411.)[41] 李岩,文健,李舟军.一种改进的基于关系的信息检索技术[J]. 计算机科学 ,2008,35(7):145-150.(Li Yan,Wen Jian,Li Whoujun.Improved Relation-based Information Retrieval Technology[J]. Computer Science,2008,35(7):145-150.) |
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
|
Shared |
|
|
|
|
|
Discussed |
|
|
|
|