|
|
|
| Automatic Concept Update Strategy Towards Heterogeneous Terminology Integration |
Haixia Sun1,2,Panpan Deng2,Jiao Li2,Liu Shen2,Qing Qian2( ) |
1School of Information Management, Nanjing University, Nanjing 210093, China
2Institute of Medical Information,Chinese Academy of Medical Sciences, Beijing 100020, China |
|
|
|
|
Abstract [Objective] This paper proposes a method updating integrated concept for the version evolution of source Knowledge Organization Systems (KOSs), aiming to promote the dynamic development of the heterogeneous terminology integration system.[Methods] Our model focuses on terms, synonym sets and preferred terms of concepts. Firstly, we identified terms changing types and preferred terms changing modes of concepts in source KOSs by exact string matching. Then, we recognized their synonym sets changing patterns through concept vector space. Finally, we updated synonym sets and preferred terms of integrated concepts fusion rule and similarity. We also assessed the results yielded by our method using medical integration concept set of STKOS and its important sources, MeSH and HUGO.[Results] The synonymous merging rate of new term from source KOSs reached 94.96%, and the update accuracy of preferred term of changed integrated concepts reached 99.91%.[Limitations] We did not consider ambiguity of the terms and the results were affected by the number of vocabulary and update order.[Conclusions] The proposed method can be applied to update concepts of synonymous knowledge organization systems because of their source KOSs evolution.
|
|
Received: 20 August 2019
Published: 14 March 2020
|
|
|
|
Corresponding Authors:
Qing Qian
E-mail: qing@imicams.ac.cn
|
| [1] |
司莉 . 知识组织系统的互操作及其实现[J]. 现代图书情报技术, 2007(3):29-34.
|
| [1] |
( Si Li . Interoperability and Its Implementation Among Knowledge Organization Systems[J]. New Technology of Library and Information Service, 2007(3):29-34.)
|
| [2] |
宋文 . 知识组织体系语义互操作研究[J]. 图书馆论坛, 2012,32(6):117-121.
|
| [2] |
( Song Wen . Research on Interoperation of Knowledge Organization System[J]. Library Tribune, 2012,32(6):117-121.)
|
| [3] |
孙坦, 刘峥 . 面向外文科技文献信息的知识组织体系建设思路[J]. 图书与情报, 2013(1):2-7.
|
| [3] |
( Sun Tan, Liu Zheng . Methodology Framework of Knowledge Organization System for Scientific & Technological Literature[J]. Library and Information, 2013(1):2-7.)
|
| [4] |
Lindberg C . The Unified Medical Language System (UMLS) of the National Library of Medicine[J]. Journal (American Medical Record Association), 1990,61(5):40-42.
|
| [5] |
潘洪建 . 知识本质: 内在、开放、动态——新知识观的思考[J]. 教育理论与实践, 2003,23(2):1-6.
|
| [5] |
( Pan Hongjian . The Essence of Knowledge: Inner, Open and Dynamic—On the Outlook on Knowledge[J]. Theory and Practice of Education, 2003,23(2):1-6.)
|
| [6] |
MeSH [DB/OL]. [2019-03-28]..
|
| [7] |
SNOMEDCT International [DB/OL]. [2019-03-28]..
|
| [8] |
LOINC[DB/OL]. [2019-03-28]..
|
| [9] |
HGNC [DB/OL]. [2019-03-28]..
|
| [10] |
中医药主题词表 [DB/OL]. [ 2019- 03- 28]. .
|
| [10] |
( Traditional Chinese Medicine Thesaurus [DB/OL]. [ 2019- 03- 28]. )
|
| [11] |
中文医学主题词表[DB/OL][ 2019- 03- 28]. .
|
| [11] |
( Chinese Medical Subject Headings)[DB/OL] [ 2019- 03- 28]. .)
|
| [12] |
Saitwal H, Qing D, Jones S , et al. Cross-terminology Mapping Challenges: A Demonstration Using Medication Terminological Systems[J]. Journal of Biomedical Informatics, 2012,45(4):613-625.
|
| [13] |
Dos Reis J C, Pruski C, Da SilveiraM , et al. Understanding Semantic Mapping Evolution by Observing Changes in Biomedical Ontologies[J]. Journal of Biomedical Informatics, 2014,47:71-82.
|
| [14] |
The National Library of Medicine. UMLS [DB/OL].[2019-03-28]. .
|
| [15] |
Da Silveira M, Dos Reis J C, Pruski C, . Management of Dynamic Biomedical Terminologies: Current Status and Future Challenges[J]. Yearbook of Medical Informatics, 2015,24(1):125-133.
|
| [16] |
Noy N F, Musen M A. PROMPTDIFF: A Fixed-Point Algorithm for Comparing Ontology Versions [C]//Proceedings of the 18th National Conference on Artificial Intelligence,Edmonton. 2002: 744-750.
|
| [17] |
Hartung M, Kirsten T, Rahm E. Analyzing the Evolution of Life Science Ontologies and Mappings [C]// Proceedings of the 5th International Workshop on Data Integration in the Life Sciences.Berlin: Springer, 2008: 11-27.
|
| [18] |
Hartung M, Kirsten T, Gross A , et al. OnEX: Exploring Changes in Life Science Ontologies[J]. BMC Bioinformatics, 2009, 10:Article No. 250.
|
| [19] |
Hartung M, Gross A, Rahm E . COnto-Diff: Generation of Complex Evolution Mappings for Life Science Ontologies[J]. Journal of Biomedical Informatics, 2013,46(1):15-32.
|
| [20] |
Gross A, Hartung M, Thor A, et al. How do Computed Ontology Mappings Evolve? A Case Study for Life Science Ontologies [C]// Proceedings of the 2012 Joint Workshop on Knowledge Evolution and Ontology Dynamics, Boston. 2012: 1-12.
|
| [21] |
Dos Reis J C, Dinh D, Da Silveira M , et al. Recognizing Lexical and Semantic Change Patterns in Evolving Life Science Ontologies to Inform Mapping Adaptation[J]. Artificial Intelligence in Medicine, 2015,63(3):153-170.
|
| [22] |
Dinh D, Dos Reis J C, Pruski C , et al. Identifying Relevant Concept Attributes to Support Mapping Maintenance Under Ontology Evolution[J]. Web Semantics: Science, Services and Agents on the World Wide Web, 2014,29:53-66.
|
| [23] |
Meilicke C, Stuckenschmidt H, Tamilin A . Reasoning Support for Mapping Revision[J]. Journal of Logic and Computation, 2009,19(5):807-829.
|
| [24] |
Castano S, Ferrara A, Lorusso D . Mapping Validation by Probabilistic Reasoning [C]// Proceedings of the 5th European Semantic Web Conference on the Semantic Web: Research & Applications, Canary Islands, Spain. Berlin, Heidelberg: Springer, 2008: 170-184.
|
| [25] |
Meyniel F, Schlunegger D, Dehaene S . The Sense of Confidence During Probabilistic Learning: A Normative Account[J]. PLoS Computational Biology, 2015,11(6):e1004305.
|
| [26] |
Khattak A M, Pervez Z, Latif K , et al. Time Efficient Reconciliation of Mappings in Dynamic Web Ontologies[J]. Knowledge-Based Systems, 2012,35:369-374.
|
| [27] |
Tang F, Tang R. Minimizing Influence of Ontology Evolution In Ontology-based Data Access System [C]// Proceedings of the 2010 IEEE International Conference on Progress in Informatics and Computing, Shanghai, China. 2010: 10-14.
|
| [28] |
Martins H, Silva N. A User-driven and a Semantic-based Ontology Mapping Evolution Approach [C]// Proceedings of the 11th International Conference on Enterprise Information Systems, Milan, Italy. 2009: 214-221.
|
| [29] |
Dos Reis J C, Pruski C, Da Silveira M , et al. DyKOSMap: A Framework for Mapping Adaptation Between Biomedical Knowledge Organization Systems[J]. Journal of Biomedical Informatics, 2015,55:153-173.
|
| [30] |
孙海霞, 成颖 . 信息集成中的字符串匹配技术研究[J]. 现代图书情报技术, 2007(7):22-26.
|
| [30] |
( Sun Haixia, Cheng Ying . Study on String-based Matching of Information Integration[J]. New Technology of Library and Information Service, 2007(7):22-26.)
|
| [31] |
孙海霞, 李军莲, 华薇娜 , 等. 科技知识组织体系语义互操作网络协同工作平台设计与实现[J]. 农业图书情报, 2019,31(1):23-34.
|
| [31] |
( Sun Haixia, Li Junlian, Hua Weina , et al. Design and Implementation of Network Collaborative Work Platform for Semantic Interoperability of Science and Technology Knowledge Organization Systems[J]. Agricultural Library and Information, 2019,31(1):23-34.)
|
| [32] |
STKOS超级科技词表协同构建与管理系统[DB/OL]. [ 2019- 04- 28]. .
|
| [32] |
( The Collaborative Building and Management System for Super Scientific and Technological Thesaurus [DB/OL]. [ 2019- 04- 28]. .)
|
|
Viewed |
|
|
|
Full text
|
|
|
|
|
Abstract
|
|
|
|
|
Cited |
|
|
|
|
| |
Shared |
|
|
|
|
| |
Discussed |
|
|
|
|
